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Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models

Mahony, Sean
; 
Smith, Terry
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Publication Date
2004-03-05
Keywords
Complete genome sequence, Horizontally transferred genes, Synonymous codon usage, Borrelia-burgdorferi, Bacterial genome, Base composition, Selection, Identification, Arabidopsis, Annotation
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Citation
Mahony, S,McInerney, JO,Smith, TJ,Golden, A (2004) 'Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models'. BMC Bioinformatics, 5 .
Abstract
This work explores a new approach to gene-prediction, based on the Self-Organizing Map, which has the ability to automatically identify multiple gene models within a genome. The current implementation, named RescueNet, uses relative synonymous codon usage as the indicator of protein-coding potential.
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Publisher DOI
10.1186/1471-2105-5-23
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Attribution-NonCommercial-NoDerivs 3.0 Ireland
cbn
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National Centre for Biomedical Engineering Science (Scholarly Articles)